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Linkages

 


Chromosome Linkages Table


The following linkage map table is based on the following books:

1. Crawford (ed.) (1990) Poultry Breeding and Genetics.
2. Stevens, L. (1991) Genetics and Evolution of the Domestic Fowl.
3. Muir and Aggrey (ed.) (2003) Poultry Genetics, Breeding and Biotechnology, CABI Publishing.

# All hashed data is from the last book (Muir & Aggrey), & is based on the following quote from this book (page 499):

The classical linkage groups I, IV and Z correspond to chromosomes 1, 2 and Z, and linkage group II to linkage group E22C19W28. These results also clearly show that several of the linkages reported in the past are incorrect. For example, naked neck and blood group P are located not on chromosome 1 (linkage group 1) but on chromosome 3 and extension of eumelanin (MC1R) is not located on chromosome 1 but located on microchromosome 11 (Takeuchi et al., 1996; Sazanov et al., 1998; Kerje et al., 2003, unpublished).

-Note, the recessive white locus (Tyrosinase) map reference is from Dr Ron Okimoto (pers. comm.)

*Recent sequencing of the yellow skin allele:
Eriksson J, Larson G, Gunnarsson U, Bed'hom B, Tixier-Boichard M, et al. (2008) Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken. PLoS Genet 4(2): e1000010. doi:10.1371/journal.pgen.1000010

Quotes from the above article:

....yellow skin was previously assigned to chromosome 24.
An examination of this chromosomal region revealed an obvious candidate gene for yellow skin, BCDO2 located at position 6.26–6.29 Mbp.

*Due to the above information, I've included w locus on Microchromosome 24 (*) in the table below. It is obvious from growing discrepancies in data below that the old Linkage Maps in Crawford, etc (which most of the table below is based on) are outdated and need significant revision.

       
Locus Map Unit
Distance
Locus Description
Comments
Group I : (# Chromosome 1- new)
Cp
 
Creeper  
 
0.4
   
R
  Rose Comb  
 
30
   
U
  Uropygial linkage not given to lav

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------------------
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the below not linear
     
lav
32.5
Lavender lav 32.5 map units to R
 
?
  linkage not given between lav & Mp
Mp
16
 
Mp 16 map units to R
the above not linear
     
 
     
Group II (# linkage group E22C19W28- new)
fr
Fray  
 
46
   
Cr
  Crest  
 
12.5
   
I, ID, IS
  Dominant White, Dun, Smoky  
 
17
   
F
  Frizzle  
 
 
   
Group III: (# Chromosome 1- old)
 
 
   
w
 
Yellow Skin *sequenced on Microchromosome 24
 
22
   
Ea-H
  Blood Group H  
 
21
   
se
  Sleepy Eye se is 45 map units from P
 
3
   
Ea-J
  Blood Group J  
p
36
   
O
  Blue Egg-Shell  
 
4
   
Cha
  Charcoal  
 
0.3
   
P
  Pea Comb *Carefoot believed E locus linked to P -43 cM, this later determined incorrect.
 
32
   
Db
  Dark Brown Db is 32 Map units from P
 
12
   
Ml
  Melanotic Ml is 45 + map units from P
 
10
   
Pg
  Pattern  
 
?
   
T
  Tardy  
 
?
   
Ea-P
  Blood Group P (#Chromosome 3 -new)
 
28
   
Na
  Naked Neck (#Chromosome 3 -new)
q
43
   
h
  Hookless - Silkiness  
 
11
   
Fl
  Flightless  
 
?
   
c
  Recessive White Tyrosinase
(#Chromosome 1 -new)
 
     
Group IV (#Chromosome 2 -new)
DV, DC
 
Duplex Comb  
 
27
   
M
  Multiple Spurs  
 
33
   
Po, Pod
  Polydactyly, Duplicate  
       
Group V: (Z Chromosome -sex chromosome)
 
 
   
ro
Restricted Ovulator  
 
3
   
sh
Shaker  
p
14
   
n
Naked  
 
7
   
px
Paroxysm  
 
1.9
   
ln
Liver Necrosis  
 
3.1
   
dwB, dwM, dw
Dwarf  
 
3.4
   
wl
Wingless  
 
0.6
   
pn
 
Prenatal Lethal  
 
3
   
Kn, Ks, K
 
Slow Feathering  
 
1.1
   
S, Sal-s, sal
 
Silver, Imperfect Albinism  
 
4
   
lk
 
Lady Killer  
 
12
   
Li
 
Light Down  
 
7
   
y
 
Recessive White Skin  
 
13
   
br
 
Brown Eye  
q
27
   
Id, ida, idc,idM
Dermal Melanin Inhibitor  
 
14
   
BSd, B
  Sex-linked Dilution, Barring  
 
13
   
ko
  Head Streak  
       
Group VI: (W Chromosome -sex chromosome- females only)
       
 
 
   
Group VII (Chromosome 6)
the below not linear
     
Gc, Alb
     
Ade-A
     
Pgm-2
     
the above not linear
     
 
 
   
Group VIII (Chromosome 7)
Ade-B
 
  adenine synthesis B
 
 
   
Group X (Microchromosome 17)
       
p
 
   
B-G
     
       
Ea-B
 
   
 
0.4
   
B-F
  MHC  
R-Rs 1
     
B-L
     
lr-GAT
     
NOR
  Nucleolar organiser region  
q      
       
Ea-B
     
       
#Microchromosome 11
       
E, ER, ER- Fay, eWh, e+, eb, es, ebc, ey, eq
  E Series  
       
*Microchromosome 24
 w
 
Yellow skin *see ref. above

 

 

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